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Mycobacterial Infection in Children at the Chu Hospital Du Mali: A Series of 12 Cases

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Bréhima Traoré1*, Abou Coulibaly1, Bourama Kané2, Lassina G Timbiné1, Abdoul Karim Sangré1, Judicaël Ouedraogo1, Bourema Kouriba1

1- Centre d’Infectiologie Charles Mérieux-Mali, Bamako, Mali
2- Pediatric department Hopital du Mali, Bamako, Mali

*Corresponding Author: Bréhima Traoré, Centre d’Infectiologie Charles Mérieux-Mali, Bamako, Mali; Email: [email protected]

Published Date: 30-10-2020

Copyright© 2020 by Traoré B, et al. All rights reserved. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Abstract

Introduction: Mycobacterial infections include infections with M. tuberculosis complex, M. leprae, and non-tuberculous mycobacteria. Mycobacteria can cause a wide variety of infection. Diagnosis of these infections is challenging especially in children because of low availability of clinical and laboratory services particularly in low-resource settings.

Methods: We describe a retrospective case series of mycobacteria infections in children aged 0-15 years at the pediatric department of the Hospital du Mali between January and December 2017. The diagnosis was based on clinical assessment, microbiology (microscopy, culture, PCR); histopathology findings; and radiology evidences.

Results: During the study period, 11354 children were seen in consultation among them 60 children had suspicion of Tuberculosis (TB). Mycobacteria infection was retained in 12 children. 66.7% were male and the average age was 8 years. Ten children (83.3%) were BCG vaccinated and 16.7% had history of TB contact. The most common symptoms were cough (83.3%), fever (75%), general state altered (75%) and dyspnea (50%). The locations were Lung (58.3%), miliary (16.7%), multifocal (8.3%), pericarditis (8.3%) and pleural (8.3%). The Tuberculin Skin Tests (TST) was negative in 58.3%. All children (100%) were seen more than a month after the onset of the symptoms. Other comorbidities were malaria (25%), severe malnutrition (25%), HIV (16.7%) and hypertension (16.7%).

Conclusion: Combination of clinical, microbiological, histopathological and radiological examinations enabled us to better explore tuberculosis in children.

Keywords

Children; CHU-HDM; CICM-Mali; Mycobacteria; Tuberculosis

M-Mali; Mycobacteria; Tuberculosis

Introduction

Bacterial infections are major threats worldwide, causing millions of deaths each year. Tuberculosis (TB) is one of the most serious tropical diseases caused by Mycobacterium tuberculosis complex. It is a major public health problem affecting one third of the world’s population in all age groups.

Pediatric TB represents 10 to 15% of TB cases worldwide and the diagnostic difficulty constitutes a major obstacle to the therapeutic management of the child [1,2]. In resource limited settings, most of Acid-Fast Bacilli (AFB) positive cases are treated as tuberculosis but some of these infections are caused by Non-Tuberculous Mycobacteria (NTM) [3,4]. NTM can cause a broad range of infections depending on the species and the host condition. Pulmonary disease and other clinical syndromes such as lymphadenitis, skin and soft tissue infection and disseminated disease occurs in children with underlying conditions [5,6]. There are limited data on the epidemiology, diagnosis and optimal management of tuberculosis and nontuberculous infections in children [7].

Methods

Setting

We describe 12 cases of mycobacterial infections among children at the Hopital du Mali (HDM) from January 1 to December 31, 2017. All children aged 0-15 years presenting to the hospital with clinical symptoms including long lasting cough (≥ 2 weeks), fever, night sweat, dyspnea, weight loss, history of TB contact, severe malnutrition were evaluated for TB.

Sampling

For children capable of expectorating, spontaneous expectoration was collected on two consecutive days. For younger children or in case if it was impossible to obtain spontaneous sputum, gastric tubing or induced sputum was applied. Extra pulmonary samples constituted of pus, ascite fluid, pleural fluid, cerebrospinal fluid, bronchoalveolar lavage were collected in sterile tubes with a screw cap. Pus of less abundant abscesses were collected on swabs. Samples were sent to the Rodolphe Mérieux Laboratory for testing in BSL-3 conditions. Polymicrobial samples (i.e. expectorations, pus) were digested, decontaminated with the N-acetylcysteine + 2% NaOH method and concentrated by centrifugation for 15 minutes at 3000 g at 4°C. Fluid of sterile site were used directly without pretreating. Mycobacterial microscopy after Ziehl Neelsen and auramine stain and culture using solid media (Lowenstein Jensen) and liquid media (Mycobacteria Growth Indicator Tubes) were used. Positive cultures were identified with TB Ag MPT64 (SD BIOLINE), Genotype MTBDRplus and Genotype Mycobacterium CM/AS (Hain Lifescience).

Other Methods

Tuberculin Skin Test (TST) was done using five units of standard Tuberculin during the initial visit and result read at 72 hrs. A TST ≥ 10 mm induration was considered positive.

Considering suggestive clinical features, other diagnostic tests were performed depending on the sites involved. If possible, chest X-Ray, histopathological and GeneXpert MTB/RIF assay were performed. Fine needle aspiration cytology was done for the peripheral lymph nodes.

Follow-up

After the diagnosis, children were treated as tuberculosis under the category-I regimen (new cases) for 6 months or the category-II (relapse, lost to follow-up and failure of previous TB treatment) for 8 months according to national guidelines. NTM were treated according to the clinical evaluation of the medical staff.

Results

Among 11354 children, 60 were evaluated for tuberculosis and 12 were treated for mycobacteria infection (Figure 1 and 2).

Demographics

Among the 12 children, the median age of was 8 years (range 7 months – 13 years old). Three (25%) were less or equal than 5 years old. The sex ratio was 2 (Table 1). Seven of them (58.3%) resided in rural area.

Number

Sex

Age (years/ months)

BCG vaccine

HIV

TST

Localisation

Case 1

F

8 years

Yes

Negative

Positive

Pulmonary

Case 2

F

8 years

Yes

Negative

Negative

Pulmonary

Case 3

M

3 years

Yes

Positive

Positive

Pulmonary

Case 4

M

13 years

No

Negative

Negative

Multifocal

Case 5

M

11 years

Yes

Negative

Positive

Pleural

Case 6

M

10 years

Yes

Negative

Negative

Pulmonary

Case 7

M

7 months

Yes

Negative

Negative

Miliary

Case 8

F

8 years

Yes

Negative

Negative

Miliary

Case 9

F

13 years

No

Negative

Negative

Pericarditis

Case 10

M

10 years

Yes

Negative

Positive

Pulmonary

Case 11

M

5 years

Yes

Positive

Positive

Pulmonary

Case 12

M

8 years

Yes

Negative

Negative

Pulmonary

Table 1: Epidemiologic and demographic characteristics of patients with mycobacteria infection.

Clinical Characteristics

Most children were BCG vaccinated (n = 10, 83.3%) (Table 1). TST was positive in 41.6%. HIV testing was positive in 16.6% of cases (Table 2).

Number

Medical History and

Risk Factors

Clinical Manifestation

Case 1

History of TB contact; malaria, severe malnutrition

Cough, alteration of general condition, fever, anorexia, chest pain

Case 2

None

Cough, alteration of general condition, fever, anorexia, chest pain, night sweats, vomiting, hemoptysis, weight loss

Case 3

HIV

Cough, fever, anorexia, bloating

Case 4

None

Cough, general state altered, fever

Case 5

History of TB contact

Cough, alteration of general condition, fever, asthenia, chest pain, dyspnea, anorexia, weight loss

Case 6

None

Cough, fever

Case 7

Severe malnutrition

Cough, fever, anorexia, diarrhea, vomiting

Case 8

High blood pressure, malaria

Cough, respiratory distress

Case 9

Severe malnutrition

Cough, general state altered, dyspnea

Case 10

Malaria

Fever, dyspnea, Hemoptysis

Case 11

HIV

Fever, dyspnea

Case 12

High blood pressure

Cough, respiratory distress, chest pain

Table 2: Clinical manifestations, underlying conditions and disease localizations in patients with mycobacteria infection.

Microbiology and Histopathology

The diagnosis was confirmed microbiologically in only five children (41.6%) (Table 3).

Number

Type of Sample

Method of Diagnosis

Confirmation

Outcome

Case 1

Sputum

microscopy/culture

M. tuberculosis

Dead

Case 2

Sputum

microscopy/culture

M. tuberculosis

Dead

Case 3

Gastric aspirate

microscopy/culture

M. spp

recovered

Case 4

Biopsy

microscopy/culture, and Anatomopathological

No

Relapse

Case 5

Pleural fluid

microscopy/culture

M. tuberculosis

Relapse

Case 6

Sputum

microscopy/culture

M. phlei

recovered

Case 7

Gastric aspirate

microscopy/culture

No

recovered

Case 8

Ascites fluid

Chest X-Ray

No

Dead

Case 9

Ascites and gastric fluid

Chest X-Ray

No

Loss of follow-up

Case 10

Gastric fluid

microscopy/culture

No

Dead

Case 11

Sputum

microscopy/culture

No

Loss of follow-up

Case 12

Gastric aspirate

Computed Tomography

No

Dead

Table 3: Type of sample, method of diagnosis and outcome of patients with mycobacteria infection.

Figure 1: Chest X-ray showing right pleurisy of great abundance- Case 5.

Figure 2: Microscopic examination 100x showing numerous acid-fast bacilli after Ziehl-Neelsen staining. (A) Direct examination; (B) Culture on the MGIT medium and (C) Culture on the LJ medium- Case5.

Discussions

Mycobacteria are a group of organisms characterized by their staining and identified as acid-fast bacilli. They can cause a variety of infections and the most notables are caused by Mycobacterium tuberculosis complex and non-tuberculous mycobacteria. Children usually gets TB infection in contact with a sputum-positive adult. They are at high risk because their immune system is less developed [8]. According to WHO, each year, at least 1 million children become ill with TB. This represent about 10-15% of all TB cases [1]. Out 60 presumptive TB cases, 12 were identified as having mycobacteria.

In our series, the diagnosis was confirmed microbiologically in only 46.1%. A controversy in childhood TB is whether bacteriological confirmation is necessary or not for the treatment [9]. Ideally, TB should be confirmed bacteriologically in order to do drug susceptibility testing. However, in children, bacteriological confirmation is challenging, as infant TB is paucibacillary, and sputum is difficult to obtain [10]. TB and NTM infections are often indistinguishable clinically or by sputum smear microscopy. This poses significant diagnostic and treatment challenges [11].

BCG Vaccination is an important way to prevent disseminated tuberculosis and tuberculosis meningitis, especially in children younger than 2 years; however, its real role has yet to be confirmed [9]. In our series, 83.3% of all children were BCG vaccinated and 100% of those with confirmed M. tuberculosis.

The age influences the risk of child to be exposed to TB. Older children interact more with adults in the community and are likely to be infected than younger children: In our series, the average age was 8 years.

The clinical presentation of pediatric TB varies from nonspecific symptoms to severe condition that worsen with time. The main symptoms include fatigue, loss of appetite, night sweats, weakness, weight loss, and evening fever. For pulmonary localization, child can present chest pain and cough. Other organs can be affected (lymph nodes, kidneys, bones, meninges). In such cases, symptoms vary according to the site [12].

In our series, the most common symptoms were cough (83.3%), fever (75%), general state altered (75%) and dyspnea (50%). The locations were Lung (58.3%), miliary (16.7%), multifocal (8.3%), pericarditis (8.3%) and pleural (8.3%). Disseminated NTM infections typically occur in children with impair immune system including HIV infection. The most common NTM associated with disseminated disease is Mycobacterium avium complex (>90%) [13].

Other comorbidities were malaria (25%), severe malnutrition (25%), HIV (16.7%) and hypertension (16.7%).

The Tuberculin Skin Test (TST) continues to be used in high endemic TB settings as a diagnostic tool for determining Latent Mycobacterium Tuberculosis Infection (LTBI) [14]. Diagnosis of LTBI may be hampered by the non-specificity of TST, BCG vaccination, exposure to NTM, booster phenomenon, and technical issues [15]. The TST was negative in 58.3%. Because 83.3% of children were vaccinated, the high rate of TST negative might be due to the malnutrition and altered general state of most of the children.

Conclusion

Children can have TB at any age and these cases are poorly explored. There are many problems with the evaluation of pediatric tuberculosis, such as the diagnostic difficulty, the lack of resources. The proportion of pediatric TB among notified cases is lower than expected. The biological, pathological and radiological examinations make it possible to better explore tuberculosis in children. There is a need for enhanced epidemiological surveillance of adults with TB to ensure early detection and treatment to reduce the incidence of TB in children.

Funding Statement

The laboratory tests in this case study were done with funding from the Centre d’Infectiologie Charles Mérieux-Mali and the Fondation Mérieux.

References

  1. WHO|Global tuberculosis report 2019. [Last accessed on October 25, 2020] https://www.who.int/tb/publications/global_report/en/
  2. Holmberg PJ, Temesgen Z, Banerjee R. Tuberculosis in children. Pediatrics in Rev. 2019;40(4):168-78.
  3. Kang HK, Jeong BH, Lee H, Park HY, Jeon K, Huh HJ, et al. Clinical significance of smear positivity for acid-fast bacilli after ≥5 months of treatment in patients with drug-susceptible pulmonary tuberculosis. Medicine. 2016;95(31).
  4. Maiga M, Siddiqui S, Diallo S, Diarra B, Traoré B, Shea YR, et al. Failure to recognize nontuberculous mycobacteria leads to misdiagnosis of chronic pulmonary tuberculosis. PLoS One. 2012;7(5):e36902.
  5. Tebruegge M, Pantazidou A, MacGregor D, Gonis G, Leslie D, Sedda L, et al. Nontuberculous mycobacterial disease in children – epidemiology, diagnosis & management at a tertiary center. PLoS One. 2016;11(1):e0147513.
  6. Henkle E, Winthrop KL. Nontuberculous mycobacteria infections in immunosuppressed hosts. Clin Chest Med. 2015;36(1):91-9.
  7. Seddon JA, Shingadia D. Epidemiology and disease burden of tuberculosis in children: a global perspective. Infect Drug Resist. 2014;7:153-65.
  8. Paul G, Al-Maani AS, Kurup PJ. Management of infants and children who are contacts of contagious tuberculous patients. Sultan Qaboos Univ Med J. 2013;13(4):477-85.
  9. Reuter A, Hughes J, Furin J. Challenges and controversies in childhood tuberculosis. The Lancet. 2019;394(10202):967-78.
  10. Fiebig L, Hauer B, Brodhun B, Balabanova Y, Haas W. Bacteriological confirmation of pulmonary tuberculosis in children with gastric aspirates in Germany, 2002-2010. Int J Tuberculosis Lung Dis. 2014;18(8):925-30.
  11. Sarro YD, Kone B, Diarra B, Kumar A, Kodio O, Fofana DB, et al. Simultaneous diagnosis of tuberculous and non-tuberculous mycobacterial diseases: Time for a better patient management. Clin Microbiol Infect Dis. 2018;3(3).
  12. Carvalho ACC, Cardoso CAA, Martire TM, Migliori GB, Sant’Anna CC, Carvalho ACC, et al. Epidemiological aspects, clinical manifestations, and prevention of pediatric tuberculosis from the perspective of the End TB Strategy. J Brasileiro de Pneumologia. 2018;44(2):134-44.
  13. Bhattacharya J, Mohandas S, Goldman DL. Nontuberculous mycobacterial infections in children. Pediatr Rev. 2019;40(4):179-90.
  14. Gualano G, Mencarini P, Lauria FN, Palmieri F, Mfinanga S, Mwaba P, et al. Tuberculin skin test – Outdated or still useful for latent TB infection screening? Int J Infect Dis. 2019;80:S20-2.
  15. Toujani S, Cherif J, Mjid M, Hedhli A, Ouahchy Y, Beji M. Evaluation of tuberculin skin test positivity and early tuberculin conversion among medical intern trainees in Tunisia. Tanaffos. 2017;16(2):149-56.
Article Info

Article Type

Research Article

Publication History

Received Date: 01-10-2020 
Accepted Date: 23-10-2020
Published Date: 30-10-2020

Copyright© 2020 by Traoré B, et al. All rights reserved. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Citation: Traoré B, et al. Mycobacterial Infection in Children at the Chu Hospital Du Mali: A Series of 12 Cases. J Clin Immunol  Microbiol. 2020;1(2):1-9.

Figures and Data

Figure 1: Chest X-ray showing right pleurisy of great abundance- Case 5.

Figure 2: Microscopic examination 100x showing numerous acid-fast bacilli after Ziehl-Neelsen staining. (A) Direct examination; (B) Culture on the MGIT medium and (C) Culture on the LJ medium- Case5.

Number

Sex

Age (years/ months)

BCG vaccine

HIV

TST

Localisation

Case 1

F

8 years

Yes

Negative

Positive

Pulmonary

Case 2

F

8 years

Yes

Negative

Negative

Pulmonary

Case 3

M

3 years

Yes

Positive

Positive

Pulmonary

Case 4

M

13 years

No

Negative

Negative

Multifocal

Case 5

M

11 years

Yes

Negative

Positive

Pleural

Case 6

M

10 years

Yes

Negative

Negative

Pulmonary

Case 7

M

7 months

Yes

Negative

Negative

Miliary

Case 8

F

8 years

Yes

Negative

Negative

Miliary

Case 9

F

13 years

No

Negative

Negative

Pericarditis

Case 10

M

10 years

Yes

Negative

Positive

Pulmonary

Case 11

M

5 years

Yes

Positive

Positive

Pulmonary

Case 12

M

8 years

Yes

Negative

Negative

Pulmonary

Table 1: Epidemiologic and demographic characteristics of patients with mycobacteria infection.

Number

Medical History and

Risk Factors

Clinical Manifestation

Case 1

History of TB contact; malaria, severe malnutrition

Cough, alteration of general condition, fever, anorexia, chest pain

Case 2

None

Cough, alteration of general condition, fever, anorexia, chest pain, night sweats, vomiting, hemoptysis, weight loss

Case 3

HIV

Cough, fever, anorexia, bloating

Case 4

None

Cough, general state altered, fever

Case 5

History of TB contact

Cough, alteration of general condition, fever, asthenia, chest pain, dyspnea, anorexia, weight loss

Case 6

None

Cough, fever

Case 7

Severe malnutrition

Cough, fever, anorexia, diarrhea, vomiting

Case 8

High blood pressure, malaria

Cough, respiratory distress

Case 9

Severe malnutrition

Cough, general state altered, dyspnea

Case 10

Malaria

Fever, dyspnea, Hemoptysis

Case 11

HIV

Fever, dyspnea

Case 12

High blood pressure

Cough, respiratory distress, chest pain

Table 2: Clinical manifestations, underlying conditions and disease localizations in patients with mycobacteria infection.

Number

Type of Sample

Method of Diagnosis

Confirmation

Outcome

Case 1

Sputum

microscopy/culture

M. tuberculosis

Dead

Case 2

Sputum

microscopy/culture

M. tuberculosis

Dead

Case 3

Gastric aspirate

microscopy/culture

M. spp

recovered

Case 4

Biopsy

microscopy/culture, and Anatomopathological

No

Relapse

Case 5

Pleural fluid

microscopy/culture

M. tuberculosis

Relapse

Case 6

Sputum

microscopy/culture

M. phlei

recovered

Case 7

Gastric aspirate

microscopy/culture

No

recovered

Case 8

Ascites fluid

Chest X-Ray

No

Dead

Case 9

Ascites and gastric fluid

Chest X-Ray

No

Loss of follow-up

Case 10

Gastric fluid

microscopy/culture

No

Dead

Case 11

Sputum

microscopy/culture

No

Loss of follow-up

Case 12

Gastric aspirate

Computed Tomography

No

Dead

Table 3: Type of sample, method of diagnosis and outcome of patients with mycobacteria infection.

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